DB code: S00540
RLCP classification | 8.131.705800.710 : Isomerization | |
---|---|---|
8.113.585900.720 : Isomerization | ||
CATH domain | 3.10.180.10 : 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 | Catalytic domain |
E.C. | 4.4.1.5 | |
CSA | ||
M-CSA | ||
MACiE |
CATH domain | Related DB codes (homologues) |
---|---|
3.10.180.10 : 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 | D00446 D00447 D00448 S00185 |
Uniprot Enzyme Name | UniprotKB | Protein name | Synonyms | RefSeq | Pfam |
---|---|---|---|---|
Q832L2 |
|
Glyoxylase family protein
|
NP_815875.1
(Protein)
NC_004668.1 (DNA/RNA sequence) |
PF12681
(Glyoxalase_2)
[Graphical View] |
P0AC81 |
Lactoylglutathione lyase
|
EC
4.4.1.5
Methylglyoxalase Aldoketomutase Glyoxalase I Glx I Ketone-aldehyde mutase S-D-lactoylglutathione methylglyoxal lyase |
NP_416168.1
(Protein)
NC_000913.2 (DNA/RNA sequence) YP_489915.1 (Protein) NC_007779.1 (DNA/RNA sequence) |
PF00903
(Glyoxalase)
[Graphical View] |
KEGG enzyme name |
---|
lactoylglutathione lyase
methylglyoxalase aldoketomutase ketone-aldehyde mutase glyoxylase I (R)-S-lactoylglutathione methylglyoxal-lyase (isomerizing) |
UniprotKB: Accession Number | Entry name | Activity | Subunit | Subcellular location | Cofactor |
---|---|---|---|---|---|
Q832L2 | Q832L2_ENTFA | ||||
P0AC81 | LGUL_ECOLI | (R)-S-lactoylglutathione = glutathione + methylglyoxal. | Homodimer. | Binds 1 nickel ion per subunit. |
KEGG Pathways | Map code | Pathways | E.C. |
---|---|---|
MAP00620 | Pyruvate metabolism |
Compound table | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Cofactors | Substrates | Products | Intermediates | ||||||||
KEGG-id | C00291 | C00051 | C00546 | C03451 | I00019 | I00020 | |||||
E.C. | |||||||||||
Compound | Nickel | Glutathione | Methylglyoxal | (R)-S-Lactoylglutathione | S-hemithiolacetal-glutathione | S-enediol-glutathione | |||||
Type | heavy metal | amino acids,carboxyl group,peptide/protein,sulfhydryl group | carbohydrate | amino acids,carbohydrate,carboxyl group,sulfide group,peptide/protein | |||||||
ChEBI |
28112 28112 |
16856 16856 |
17158 17158 |
15694 15694 |
|||||||
PubChem |
935 935 |
124886 25246407 124886 25246407 |
880 880 |
440018 440018 |
|||||||
2p25A | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1f9zA | Bound:_NI | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1f9zB | Bound:_NI | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa5A | Analogue:_ZN | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa5B | Analogue:_ZN | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa6A | Analogue:_CO | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa6B | Analogue:_CO | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa7A | Analogue:_CD | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa7B | Analogue:_CD | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa8A | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |||||
1fa8B | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound |
Reference for Active-site residues | ||
---|---|---|
resource | references | E.C. |
Swiss-prot;Q59384, Q04760 & PDB;1fro & literature [28] |
Active-site residues | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
PDB | Catalytic residues | Cofactor-binding residues | Modified residues | Main-chain involved in catalysis | Comment | |||||
2p25A | GLU 55;GLU 123 | HIS 8;GLU 55;HIS 76;GLU 123(Nickel binding) | ||||||||
1f9zA | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1f9zB | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa5A | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa5B | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa6A | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa6B | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa7A | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa7B | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa8A | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) | ||||||||
1fa8B | GLU 56;GLU 122 | HIS 5;GLU 56;HIS 74;GLU 122(Nickel binding) |
References for Catalytic Mechanism | ||
---|---|---|
References | Sections | No. of steps in catalysis |
[1]
|
Fig.6, p.4856-4857 | |
[2]
|
Fig.6, p.10029 | 2 |
[16]
|
Fig.5, p.3390 | 3 |
[19]
|
Fig.3, p.21626-21628 | 3 |
[20]
|
Fig.1 | 2 |
[22]
|
Fig.6, p.13488-13489 | 2 |
[23]
|
p.93-94 | |
[24]
|
p.8725-8726 | |
[28]
|
Scheme 9, Scheme 13 | 3 |
[30]
|
Scheme 3, Scheme 4, p.10284-10289 | 4 |
[31]
|
Fig.4, p.6979 | 3 |
References | |
---|---|
[1] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 7138835 |
Journal | Biochemistry |
Year | 1982 |
Volume | 21 |
Pages | 4850-7 |
Authors | Sellin S, Eriksson LE, Mannervik B |
Title |
Fluorescence and nuclear relaxation enhancement studies of the binding of glutathione derivatives to manganese-reconstituted glyoxalase I from human erythrocytes. |
Related PDB | |
Related UniProtKB | |
[2] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 7107595 |
Journal | J Biol Chem |
Year | 1982 |
Volume | 257 |
Pages | 10023-9 |
Authors | Sellin S, Rosevear PR, Mannervik B, Mildvan AS |
Title | Nuclear relaxation studies of the role of the essential metal in glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[3] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 6853506 |
Journal | J Biol Chem |
Year | 1983 |
Volume | 258 |
Pages | 6823-6 |
Authors | Rosevear PR, Chari RV, Kozarich JW, Sellin S, Mannervik B, Mildvan AS |
Title | 13C NMR studies of the product complex of glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[4] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 6296126 |
Journal | J Biol Chem |
Year | 1983 |
Volume | 258 |
Pages | 2091-3 |
Authors | Sellin S, Eriksson LE, Aronsson AC, Mannervik B |
Title | Octahedral metal coordination in the active site of glyoxalase I as evidenced by the properties of Co(II)-glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[5] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 6547959 |
Journal | J Biol Chem |
Year | 1984 |
Volume | 259 |
Pages | 11436-47 |
Authors | Rosevear PR, Sellin S, Mannervik B, Kuntz ID, Mildvan AS |
Title | NMR and computer modeling studies of the conformations of glutathione derivatives at the active site of glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[6] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 2827734 |
Journal | Biochemistry |
Year | 1987 |
Volume | 26 |
Pages | 6779-84 |
Authors | Sellin S, Eriksson LE, Mannervik B |
Title | Electron paramagnetic resonance study of the active site of copper-substituted human glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[7] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 2226450 |
Journal | Eur J Biochem |
Year | 1990 |
Volume | 193 |
Pages | 83-90 |
Authors | Rae C, Berners-Price SJ, Bulliman BT, Kuchel PW |
Title | Kinetic analysis of the human erythrocyte glyoxalase system using 1H NMR and a computer model. |
Related PDB | |
Related UniProtKB | |
[8] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1755849 |
Journal | Biochem Biophys Res Commun |
Year | 1991 |
Volume | 181 |
Pages | 657-63 |
Authors | Li J, Guha MK, Creighton DJ |
Title | Enzyme chemistry of dithiohemiacetals: synthesis and characterization of S-D-dithiomandeloylglutathione as an alternate substrate for glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[9] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 2043110 |
Journal | Biochem Biophys Res Commun |
Year | 1991 |
Volume | 177 |
Pages | 252-8 |
Authors | Xie XF, Creighton DJ |
Title | Synthesis and initial characterization of gamma-L-glutamyl-L-thiothreonylglycine and gamma-L-glutamyl-L-allo-thiothreonylglycine as steric probes of the active site of glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[10] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1472100 |
Journal | Biochem Pharmacol |
Year | 1992 |
Volume | 44 |
Pages | 2357-63 |
Authors | Lo TW, Thornalley PJ |
Title | Inhibition of proliferation of human leukaemia 60 cells by diethyl esters of glyoxalase inhibitors in vitro. |
Related PDB | |
Related UniProtKB | |
[11] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1627549 |
Journal | Biochemistry |
Year | 1992 |
Volume | 31 |
Pages | 6069-77 |
Authors | Landro JA, Brush EJ, Kozarich JW |
Title | Isomerization of (R)- and (S)-glutathiolactaldehydes by glyoxalase I: the case for dichotomous stereochemical behavior in a single active site. |
Related PDB | |
Related UniProtKB | |
[12] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1390924 |
Journal | Biochim Biophys Acta |
Year | 1992 |
Volume | 1159 |
Pages | 203-8 |
Authors | Hamilton DS, Creighton DJ |
Title | Caution: the glycylmethyl and glycylethyl esters of glutathione are substrates for glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[13] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1459997 |
Journal | J Biol Chem |
Year | 1992 |
Volume | 267 |
Pages | 24933-6 |
Authors | Hamilton DS, Creighton DJ |
Title |
Inhibition of glyoxalase I by the enediol mimic S-(N-hydroxy-N-methylcarbamoyl)glutathione. |
Related PDB | |
Related UniProtKB | |
[14] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 8359522 |
Journal | Biochem Soc Trans |
Year | 1993 |
Volume | 21 |
Pages | 515-7 |
Authors | Mannervik B, Ridderstrom M |
Title | Catalytic and molecular properties of glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[15] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 8142352 |
Journal | Biochemistry |
Year | 1994 |
Volume | 33 |
Pages | 3548-59 |
Authors | Rae C, O'Donoghue SI, Bubb WA, Kuchel PW |
Title | Stereospecificity of substrate usage by glyoxalase 1: nuclear magnetic resonance studies of kinetics and hemithioacetal substrate conformation. |
Related PDB | |
Related UniProtKB | |
[16] | |
Resource | |
Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS). |
Medline ID | 97361820 |
PubMed ID | 9218781 |
Journal | EMBO J |
Year | 1997 |
Volume | 16 |
Pages | 3386-95 |
Authors | Cameron AD, Olin B, Ridderstrom M, Mannervik B, Jones TA |
Title | Crystal structure of human glyoxalase I--evidence for gene duplication and 3D domain swapping. |
Related PDB | 1fro |
Related UniProtKB | Q04760 |
[17] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9671502 |
Journal | Biochemistry |
Year | 1998 |
Volume | 37 |
Pages | 10345-53 |
Authors | Saint-Jean AP, Phillips KR, Creighton DJ, Stone MJ |
Title | Active monomeric and dimeric forms of Pseudomonas putida glyoxalase I: evidence for 3D domain swapping. |
Related PDB | |
Related UniProtKB | |
[18] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9871526 |
Journal | Bioorg Med Chem Lett |
Year | 1998 |
Volume | 8 |
Pages | 705-10 |
Authors | Ly HD, Clugston SL, Sampson PB, Honek JF |
Title | Syntheses and kinetic evaluation of hydroxamate-based peptide inhibitors of glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[19] | |
Resource | |
Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS). |
Medline ID | 98370994 |
PubMed ID | 9705294 |
Journal | J Biol Chem |
Year | 1998 |
Volume | 273 |
Pages | 21623-8 |
Authors | Ridderstrom M, Cameron AD, Jones TA, Mannervik B |
Title | Involvement of an active-site Zn2+ ligand in the catalytic mechanism of human glyoxalase I. |
Related PDB | 1bh5 |
Related UniProtKB | Q04760 |
[20] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9689946 |
Journal | J Theor Biol |
Year | 1998 |
Volume | 193 |
Pages | 91-8 |
Authors | Kalapos MP |
Title | From mineral support to enzymatic catalysis--further assumptions for the evolutionary history of glyoxalase system. |
Related PDB | |
Related UniProtKB | |
[21] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10082363 |
Journal | Protein Sci |
Year | 1998 |
Volume | 7 |
Pages | 1661-70 |
Authors | Bergdoll M, Eltis LD, Cameron AD, Dumas P, Bolin JT |
Title | All in the family: structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly. |
Related PDB | |
Related UniProtKB | |
[22] | |
Resource | |
Comments | X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS). |
Medline ID | 99452689 |
PubMed ID | 10521255 |
Journal | Biochemistry |
Year | 1999 |
Volume | 38 |
Pages | 13480-90 |
Authors | Cameron AD, Ridderstrom M, Olin B, Kavarana MJ, Creighton DJ, Mannervik B |
Title | Reaction mechanism of glyoxalase I explored by an X-ray crystallographic analysis of the human enzyme in complex with a transition state analogue. |
Related PDB | 1qin 1qip |
Related UniProtKB | Q04760 |
[23] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10403382 |
Journal | FEBS Lett |
Year | 1999 |
Volume | 453 |
Pages | 90-4 |
Authors | Feierberg I, Cameron AD, Aqvist J |
Title | Energetics of the proposed rate-determining step of the glyoxalase I reaction. |
Related PDB | |
Related UniProtKB | |
[24] | |
Resource | |
Comments | X-RAY CRYSTALLOGRAPHY. |
Medline ID | 20374551 |
PubMed ID | 10913283 |
Journal | Biochemistry |
Year | 2000 |
Volume | 39 |
Pages | 8719-27 |
Authors | He MM, Clugston SL, Honek JF, Matthews BW |
Title | Determination of the structure of Escherichia coli glyoxalase I suggests a structural basis for differential metal activation. |
Related PDB | 1f9z 1fa5 1fa6 1fa7 1fa8 |
Related UniProtKB | Q59384 |
[25] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10801792 |
Journal | J Biol Chem |
Year | 2000 |
Volume | 275 |
Pages | 22657-62 |
Authors | Feierberg I, Luzhkov V, Aqvist J |
Title | Computer simulation of primary kinetic isotope effects in the proposed rate-limiting step of the glyoxalase I catalyzed reaction. |
Related PDB | |
Related UniProtKB | |
[26] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11052803 |
Journal | J Med Chem |
Year | 2000 |
Volume | 43 |
Pages | 3981-6 |
Authors | Kalsi A, Kavarana MJ, Lu T, Whalen DL, Hamilton DS, Creighton DJ |
Title | Role of hydrophobic interactions in binding S-(N-aryl/alkyl-N-hydroxycarbamoyl)glutathiones to the active site of the antitumor target enzyme glyoxalase I. |
Related PDB | |
Related UniProtKB | |
[27] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11212839 |
Journal | J Protein Chem |
Year | 2000 |
Volume | 19 |
Pages | 389-97 |
Authors | Stokvis E, Clugston SL, Honek JF, Heck AJ |
Title |
Characterization of glyoxalase I (E. |
Related PDB | |
Related UniProtKB | |
[28] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11368170 |
Journal | Arch Biochem Biophys |
Year | 2001 |
Volume | 387 |
Pages | 1-10 |
Authors | Creighton DJ, Hamilton DS |
Title |
Brief history of glyoxalase I and what we have learned about metal ion-dependent, |
Related PDB | |
Related UniProtKB | |
[29] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11453985 |
Journal | Eur J Biochem |
Year | 2001 |
Volume | 268 |
Pages | 3930-6 |
Authors | Martins AM, Mendes P, Cordeiro C, Freire AP |
Title | In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae. |
Related PDB | |
Related UniProtKB | |
[30] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11603978 |
Journal | J Am Chem Soc |
Year | 2001 |
Volume | 123 |
Pages | 10280-9 |
Authors | Himo F, Siegbahn PE |
Title | Catalytic mechanism of glyoxalase I: a theoretical study. |
Related PDB | |
Related UniProtKB | |
[31] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11459475 |
Journal | J Am Chem Soc |
Year | 2001 |
Volume | 123 |
Pages | 6973-82 |
Authors | Richter U, Krauss M |
Title | Active site structure and mechanism of human glyoxalase I-an ab initio theoretical study. |
Related PDB | |
Related UniProtKB | |
[32] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11050082 |
Journal | J Biol Chem |
Year | 2001 |
Volume | 276 |
Pages | 1845-9 |
Authors | Frickel EM, Jemth P, Widersten M, Mannervik B |
Title | Yeast glyoxalase I is a monomeric enzyme with two active sites. |
Related PDB | |
Related UniProtKB | |
[33] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11853416 |
Journal | J Am Chem Soc |
Year | 2002 |
Volume | 124 |
Pages | 1564-5 |
Authors | Diaconu D, Hu Z, Gorun SM |
Title | Copper-based bioinspired oxygenation and glyoxalase-like reactivity. |
Related PDB | |
Related UniProtKB | |
[34] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12405831 |
Journal | J Am Chem Soc |
Year | 2002 |
Volume | 124 |
Pages | 13047-52 |
Authors | Rose IA, Nowick JS |
Title |
Methylglyoxal synthetase, |
Related PDB | |
Related UniProtKB |
Comments |
---|
The enzymes from bacteria such as E. This enzyme catalyzes the following reactions: (A) Addition of sulfhydryl group of glutathione to carbonyl group of methylglyoxal, (B) Isomerization; Shift of double-bond from O=C-C to O-C=C, (C) Isomerization; Shift of double-bond from C=C-O to C-C=O: According to the literature [28] and [30], As for the S-enantiomer reaction, (B) Isomerization; Shift of double-bond from O=C-C to O-C=C, (B1) The carbonyl group (O2) and hydroxyl group (O1) of the hemiacetal intermediate are bound to nickel ion. (B2) Glu122 acts as a general base to deprotonate C1-H, (C) Isomerization; Shift of double-bond from C=C-O to C-C=O: (C1) Glu122 acts as a general acid to protonate the C2 carbon, (C2) Glu56 acts as a general acid to protonate the O2 oxygen, For the R-enantiomer reaction, (B') Isomerization; Shift of double-bond from O=C-C to O-C=C, (B'1) The carbonyl group (O2) and hydroxyl group (O1) of the hemiacetal intermediate are bound to nikel ion. (B'2) Glu56 acts as a general base to deprotonate C1-H. (B'2) Glu56 acts as a general acid to protonate O2, (C') Isomerization; Shift of double-bond from C=C-O to C-C=O: (C'1) Glu122 acts as a general base to deprotonate the O1 hydroxyl group. (C'2) Glu122 acts as a general acid to protonate the C2 carbon, For the R-enantiomer reaction, (X) Elimination of glutathione from the R-enantiomer, (Y) Addition of glutathione to the aldehyde intermediate, After the formation of the S-enantiomer, However, |
Created | Updated |
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2004-05-27 | 2010-01-21 |