DB code: S00417
| CATH domain | 3.40.718.10 : Isopropylmalate Dehydrogenase | Catalytic domain |
|---|---|---|
| E.C. | 1.1.1.85 | |
| CSA | 1a05 | |
| M-CSA | 1a05 | |
| MACiE | ||
| CATH domain | Related DB codes (homologues) |
|---|---|
| 3.40.718.10 : Isopropylmalate Dehydrogenase | S00416 |
| Uniprot Enzyme Name | UniprotKB | Protein name | Synonyms | Pfam |
|---|---|---|---|
| P12010 |
3-isopropylmalate dehydrogenase
|
EC
1.1.1.85
Beta-IPM dehydrogenase IMDH 3-IPM-DH |
PF00180
(Iso_dh)
[Graphical View] |
| P61495 |
3-isopropylmalate dehydrogenase
|
EC
1.1.1.85
Beta-IPM dehydrogenase IMDH 3-IPM-DH |
PF00180
(Iso_dh)
[Graphical View] |
| Q56268 |
3-isopropylmalate dehydrogenase
|
EC
1.1.1.85
Beta-IPM dehydrogenase IMDH 3-IPM-DH |
PF00180
(Iso_dh)
[Graphical View] |
| KEGG enzyme name |
|---|
|
3-isopropylmalate dehydrogenase
beta-isopropylmalic enzyme beta-isopropylmalate dehydrogenase threo-Ds-3-isopropylmalate dehydrogenase 3-carboxy-2-hydroxy-4-methylpentanoate:NAD+ oxidoreductase |
| UniprotKB: Accession Number | Entry name | Activity | Subunit | Subcellular location | Cofactor |
|---|---|---|---|---|---|
| P12010 | LEU3_BACCO | (2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl- 2-oxopentanoate + CO(2) + NADH. | Homodimer. | Cytoplasm. | Binds 1 magnesium or manganese ion per subunit. |
| P61495 | LEU3_THETH | (2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl- 2-oxopentanoate + CO(2) + NADH. | Homodimer. | Cytoplasm. | Binds 1 magnesium or manganese ion per subunit. |
| Q56268 | LEU3_THIFE | (2R,3S)-3-isopropylmalate + NAD(+) = 4-methyl- 2-oxopentanoate + CO(2) + NADH. | Homodimer. | Cytoplasm. | Binds 1 magnesium or ion per subunit. |
| KEGG Pathways | Map code | Pathways | E.C. |
|---|---|---|
| MAP00290 | Valine, leucine and isoleucine biosynthesis |
| Compound table | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cofactors | Substrates | Products | Intermediates | ||||||||||
| KEGG-id | C00305 | C04411 | C00003 | C04236 | C00004 | C00233 | C00011 | ||||||
| E.C. | |||||||||||||
| Compound | Magnesium | 3-Isopropylmalate | NAD+ | 3-Carboxy-4-methyl-2-oxopentanoate | NADH | 4-Methyl-2-oxopentanoate | CO2 | ||||||
| Type | divalent metal (Ca2+, Mg2+) | carbohydrate,carboxyl group | amide group,amine group,nucleotide | carbohydrate,carboxyl group | amide group,amine group,nucleotide | carbohydrate,carboxyl group | others | ||||||
| ChEBI |
18420 18420 |
43468 43468 |
15846 15846 |
1467 1467 |
16908 16908 |
48430 48430 |
16526 16526 |
||||||
| PubChem |
888 888 |
5462261 5462261 |
5893 5893 |
5462259 5462259 |
439153 439153 |
70 70 |
280 280 |
||||||
| 1a05A |
|
|
|
|
|
Bound:_MG | Bound:IPM | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1a05B |
|
|
|
|
|
Bound:_MG | Bound:IPM | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1ayqA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1ayqB |
|
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|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dpzA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dpzB |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dr0A |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dr0B |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dr8A |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1dr8B |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1g2uA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1gc8A |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1gc8B |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1gc9A |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1hexA |
|
|
|
|
|
Unbound | Unbound | Bound:NAD | Unbound | Unbound | Unbound | Unbound | |
| 1idmA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1ipdA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osiA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osiB |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osiC |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osiD |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osjA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1osjB |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1xaaA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1xabA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1xacA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 1xadA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 2ayqA |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| 2ayqB |
|
|
|
|
|
Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | Unbound | |
| Reference for Active-site residues | ||
|---|---|---|
| resource | references | E.C. |
| Literature [5], [12] & [15] | ||
| Active-site residues | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Catalytic residues | Cofactor-binding residues | Modified residues | Main-chain involved in catalysis | Comment | |||||
| 1a05A |
|
|
|
|
|
TYR 140;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| 1a05B |
|
|
|
|
|
TYR 140;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| 1ayqA |
|
|
|
|
|
TYR 141;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| 1ayqB |
|
|
|
|
|
TYR 141;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| 1dpzA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1dpzB |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1dr0A |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1dr0B |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1dr8A |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1dr8B |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1g2uA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant A172V | ||
| 1gc8A |
|
|
|
|
|
TYR 1139;LYS 1185;ASP 1217 | ASP 1217;ASP 1241;ASP 1245(Magnesium binding) | mutant A1172F | ||
| 1gc8B |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant A172F | ||
| 1gc9A |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant A172G | ||
| 1hexA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1idmA |
|
|
|
|
|
TYR 137;LYS 183;ASP 215 | ASP 215;ASP 239;ASP 243(Magnesium binding) | mutant R82;K83 | ||
| 1ipdA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1osiA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1osiB |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1osiC |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1osiD |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1osjA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant A172L | ||
| 1osjB |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1xaaA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1xabA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | |||
| 1xacA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant S82R | ||
| 1xadA |
|
|
|
|
|
TYR 139;LYS 185;ASP 217 | ASP 217;ASP 241;ASP 245(Magnesium binding) | mutant S82R | ||
| 2ayqA |
|
|
|
|
|
TYR 141;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| 2ayqB |
|
|
|
|
|
TYR 141;LYS 190;ASP 222 | ASP 222;ASP 246;ASP 250(Magnesium binding) | |||
| References for Catalytic Mechanism | ||
|---|---|---|
| References | Sections | No. of steps in catalysis |
|
[5]
|
Fig.7, p.8675-8676 | |
|
[7]
|
||
|
[9]
|
Fig.1 | |
|
[15]
|
p.2164-2165 | |
|
[26]
|
p.976-980 | |
| References | |
|---|---|
| [1] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 3069841 |
| Journal | J Biochem (Tokyo) |
| Year | 1988 |
| Volume | 104 |
| Pages | 679-80 |
| Authors | Katsube Y, Tanaka N, Takenaka A, Yamada T, Oshima T |
| Title | Crystallization and preliminary X-ray data for 3-isopropylmalate dehydrogenase of Thermus thermophilus. |
| Related PDB | |
| Related UniProtKB | |
| [2] | |
| Resource | |
| Comments | X-ray crystallography |
| Medline ID | |
| PubMed ID | 2277037 |
| Journal | J Biochem (Tokyo) |
| Year | 1990 |
| Volume | 108 |
| Pages | 449-56 |
| Authors | Yamada T, Akutsu N, Miyazaki K, Kakinuma K, Yoshida M, Oshima T |
| Title |
Purification, |
| Related PDB | |
| Related UniProtKB | |
| [3] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 1901851 |
| Journal | J Biochem (Tokyo) |
| Year | 1991 |
| Volume | 109 |
| Pages | 1-2 |
| Authors | Onodera K, Moriyama H, Takenaka A, Tanaka N, Akutsu N, Muro M, Oshima T, Imada K, Sato M, Katsube Y |
| Title | Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase. |
| Related PDB | |
| Related UniProtKB | |
| [4] | |
| Resource | |
| Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) |
| Medline ID | 92085286 |
| PubMed ID | 1748999 |
| Journal | J Mol Biol |
| Year | 1991 |
| Volume | 222 |
| Pages | 725-38 |
| Authors | Imada K, Sato M, Tanaka N, Katsube Y, Matsuura Y, Oshima T |
| Title |
Three-dimensional structure of a highly thermostable enzyme, |
| Related PDB | 1ipd |
| Related UniProtKB | P61495 |
| [5] | |
| Resource | |
| Comments | Homologous enzyme |
| Medline ID | |
| PubMed ID | 1888729 |
| Journal | Biochemistry |
| Year | 1991 |
| Volume | 30 |
| Pages | 8671-8 |
| Authors | Hurley JH, Dean AM, Koshland DE Jr, Stroud RM |
| Title | Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: implications from the structures of magnesium-isocitrate and NADP+ complexes. |
| Related PDB | |
| Related UniProtKB | |
| [6] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 1400259 |
| Journal | J Biochem (Tokyo) |
| Year | 1992 |
| Volume | 112 |
| Pages | 173-4 |
| Authors | Sakurai M, Onodera K, Moriyama H, Matsumoto O, Tanaka N, Numata K, Imada K, Sato M, Katsube Y, Oshima T |
| Title | Crystallization and preliminary X-ray studies of a Bacillus subtilis and Thermus thermophilus HB8 chimeric 3-isopropylmalate dehydrogenase and thermostable mutants of it. |
| Related PDB | |
| Related UniProtKB | |
| [7] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8405446 |
| Journal | FEBS Lett |
| Year | 1993 |
| Volume | 332 |
| Pages | 37-8 |
| Authors | Miyazaki K, Oshima T |
| Title | Tyr-139 in Thermus thermophilus 3-isopropylmalate dehydrogenase is involved in catalytic function. |
| Related PDB | |
| Related UniProtKB | |
| [8] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8029202 |
| Journal | Protein Eng |
| Year | 1994 |
| Volume | 7 |
| Pages | 453-9 |
| Authors | Onodera K, Sakurai M, Moriyama H, Tanaka N, Numata K, Oshima T, Sato M, Katsube Y |
| Title | Three-dimensional structures of chimeric enzymes between Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases. |
| Related PDB | |
| Related UniProtKB | |
| [9] | |
| Resource | |
| Comments | X-ray crystallography |
| Medline ID | |
| PubMed ID | 7881901 |
| Journal | Structure |
| Year | 1994 |
| Volume | 2 |
| Pages | 1007-16 |
| Authors | Hurley JH, Dean AM |
| Title | Structure of 3-isopropylmalate dehydrogenase in complex with NAD+: ligand-induced loop closing and mechanism for cofactor specificity. |
| Related PDB | 1hex |
| Related UniProtKB | |
| [10] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8140100 |
| Journal | Protein Eng |
| Year | 1994 |
| Volume | 7 |
| Pages | 99-102 |
| Authors | Miyazaki K, Kadono S, Sakurai M, Moriyama H, Tanaka N, Oshima T |
| Title | Chemical modification and site-directed mutagenesis of Tyr36 of 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8. |
| Related PDB | |
| Related UniProtKB | |
| [11] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 7590327 |
| Journal | Gene |
| Year | 1995 |
| Volume | 164 |
| Pages | 85-7 |
| Authors | Kryger G, Wallon G, Lovett ST, Ringe D, Petsko GA |
| Title | Revision of the amino-acid sequence of 3-isopropylmalate dehydrogenase from Salmonella typhimurium by means of X-ray crystallography. |
| Related PDB | |
| Related UniProtKB | |
| [12] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8576088 |
| Journal | J Biochem (Tokyo) |
| Year | 1995 |
| Volume | 118 |
| Pages | 745-52 |
| Authors | Kadono S, Sakurai M, Moriyama H, Sato M, Hayashi Y, Oshima T, Tanaka N |
| Title | Ligand-induced changes in the conformation of 3-isopropylmalate dehydrogenase from Thermus thermophilus. |
| Related PDB | |
| Related UniProtKB | |
| [13] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 7608131 |
| Journal | J Biochem (Tokyo) |
| Year | 1995 |
| Volume | 117 |
| Pages | 408-13 |
| Authors | Moriyama H, Onodera K, Sakurai M, Tanaka N, Kirino-Kagawa H, Oshima T, Katsube Y |
| Title | The crystal structures of mutated 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8 and their relationship to the thermostability of the enzyme. |
| Related PDB | |
| Related UniProtKB | |
| [14] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8637845 |
| Journal | Protein Eng |
| Year | 1995 |
| Volume | 8 |
| Pages | 763-7 |
| Authors | Sakurai M, Moriyama H, Onodera K, Kadono S, Numata K, Hayashi Y, Kawaguchi J, Yamagishi A, Oshima T, Tanaka N |
| Title |
The crystal structure of thermostable mutants of chimeric 3-isopropylmalate dehydrogenase, |
| Related PDB | 1xac 1xad |
| Related UniProtKB | |
| [15] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8535253 |
| Journal | Protein Sci |
| Year | 1995 |
| Volume | 4 |
| Pages | 2156-67 |
| Authors | Dean AM, Dvorak L |
| Title | The role of glutamate 87 in the kinetic mechanism of Thermus thermophilus isopropylmalate dehydrogenase. |
| Related PDB | |
| Related UniProtKB | |
| [16] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 7773180 |
| Journal | Protein Sci |
| Year | 1995 |
| Volume | 4 |
| Pages | 84-92 |
| Authors | Zhang T, Koshland DE Jr |
| Title | Modeling substrate binding in Thermus thermophilus isopropylmalate dehydrogenase. |
| Related PDB | |
| Related UniProtKB | |
| [17] | |
| Resource | |
| Comments | X-ray crystallography |
| Medline ID | |
| PubMed ID | |
| Journal | Acta Crystallogr D Biol Crystallogr |
| Year | 1996 |
| Volume | 52 |
| Pages | 124-8 |
| Authors | Sakurai M, Ohzeki M, Miyazaki K, Moriyama H, Sato M, Tanaka N, Oshima T |
| Title | Structure of a loop-deleted variant of 3-isopropylmalate dehydrogenase from Thermus thermophilus: An internal reprieve tolerance mechanism. |
| Related PDB | 1idm |
| Related UniProtKB | |
| [18] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 8875643 |
| Journal | Protein Eng |
| Year | 1996 |
| Volume | 9 |
| Pages | 663-70 |
| Authors | Magyar C, Szilagyi A, Zavodszky P |
| Title | Relationship between thermal stability and 3-D structure in a homology model of 3-isopropylmalate dehydrogenase from Escherichia coli. |
| Related PDB | |
| Related UniProtKB | |
| [19] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 15299625 |
| Journal | Acta Crystallogr D Biol Crystallogr |
| Year | 1996 |
| Volume | 52 |
| Pages | 623-30 |
| Authors | Nagata C |
| Title | Cryocrystallography of 3-Isopropylmalate Dehydrogenase from Thermus thermophilus and its Chimeric Enzyme. |
| Related PDB | 1xaa 1xab |
| Related UniProtKB | |
| [20] | |
| Resource | |
| Comments | X-RAY CRYSTALLOGRAPHY (3.0 ANGSTROMS) |
| Medline ID | 98158316 |
| PubMed ID | 9498551 |
| Journal | J Biochem (Tokyo) |
| Year | 1997 |
| Volume | 122 |
| Pages | 1092-104 |
| Authors | Tsuchiya D, Sekiguchi T, Takenaka A |
| Title |
Crystal structure of 3-isopropylmalate dehydrogenase from the moderate facultative thermophile, |
| Related PDB | 1ayq 2ayq |
| Related UniProtKB | P12010 |
| [21] | |
| Resource | |
| Comments | X-RAY CRYSTALLOGRAPHY (2.27 ANGSTROMS) |
| Medline ID | 97240818 |
| PubMed ID | 9086278 |
| Journal | J Mol Biol |
| Year | 1997 |
| Volume | 266 |
| Pages | 1016-31 |
| Authors | Wallon G, Kryger G, Lovett ST, Oshima T, Ringe D, Petsko GA |
| Title | Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus. |
| Related PDB | |
| Related UniProtKB | P61495 |
| [22] | |
| Resource | |
| Comments | X-ray crystallography |
| Medline ID | |
| PubMed ID | 9051733 |
| Journal | Protein Eng |
| Year | 1997 |
| Volume | 10 |
| Pages | 45-52 |
| Authors | Qu C, Akanuma S, Moriyama H, Tanaka N, Oshima T |
| Title | A mutation at the interface between domains causes rearrangement of domains in 3-isopropylmalate dehydrogenase. |
| Related PDB | 1osi 1osj |
| Related UniProtKB | |
| [23] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 9278279 |
| Journal | Protein Eng |
| Year | 1997 |
| Volume | 10 |
| Pages | 665-72 |
| Authors | Wallon G, Lovett ST, Magyar C, Svingor A, Szilagyi A, Zavodszky P, Ringe D, Petsko GA |
| Title |
Sequence and homology model of 3-isopropylmalate dehydrogenase from the psychrotrophic bacterium Vibrio sp. |
| Related PDB | |
| Related UniProtKB | |
| [24] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 9761923 |
| Journal | Acta Crystallogr D Biol Crystallogr |
| Year | 1998 |
| Volume | 54 |
| Pages | 444-5 |
| Authors | Suzuki T, Moriyama H, Hirose R, Sakurai M, Tanaka N, Oshima T |
| Title |
Crystallization and preliminary X-ray studies on the hyperstable 3-isopropylmalate dehydrogenase from the thermoacidophilic archaeon Sulfolobus sp. |
| Related PDB | |
| Related UniProtKB | |
| [25] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 9636162 |
| Journal | Proc Natl Acad Sci U S A |
| Year | 1998 |
| Volume | 95 |
| Pages | 7406-11 |
| Authors | Zavodszky P, Kardos J, Svingor, Petsko GA |
| Title | Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins. |
| Related PDB | |
| Related UniProtKB | |
| [26] | |
| Resource | |
| Comments | X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) |
| Medline ID | 98416693 |
| PubMed ID | 9739088 |
| Journal | Structure |
| Year | 1998 |
| Volume | 6 |
| Pages | 971-82 |
| Authors | Imada K, Inagaki K, Matsunami H, Kawaguchi H, Tanaka H, Tanaka N, Namba K |
| Title | Structure of 3-isopropylmalate dehydrogenase in complex with 3-isopropylmalate at 2.0 A resolution: the role of Glu88 in the unique substrate-recognition mechanism. |
| Related PDB | 1a05 |
| Related UniProtKB | Q56268 |
| [27] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 10683439 |
| Journal | FEBS Lett |
| Year | 2000 |
| Volume | 468 |
| Pages | 48-52 |
| Authors | Nemeth A, Svingor A, Pocsik M, Dobo J, Magyar C, Szilagyi A, Gal P, Zavodszky P |
| Title | Mirror image mutations reveal the significance of an intersubunit ion cluster in the stability of 3-isopropylmalate dehydrogenase. |
| Related PDB | |
| Related UniProtKB | |
| [28] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 10989439 |
| Journal | Methods Enzymol |
| Year | 2000 |
| Volume | 324 |
| Pages | 301-22 |
| Authors | Hayashi-Iwasaki Y, Oshima T |
| Title | Purification and characterization of recombinant 3-isopropylmalate dehydrogenases from Thermus thermophilus and other microorganisms. |
| Related PDB | |
| Related UniProtKB | |
| [29] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 10964981 |
| Journal | Protein Eng |
| Year | 2000 |
| Volume | 13 |
| Pages | 527-33 |
| Authors | Hori T, Moriyama H, Kawaguchi J, Hayashi-Iwasaki Y, Oshima T, Tanaka N |
| Title | The initial step of the thermal unfolding of 3-isopropylmalate dehydrogenase detected by the temperature-jump Laue method. |
| Related PDB | |
| Related UniProtKB | |
| [30] | |
| Resource | |
| Comments | X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS) |
| Medline ID | 20272095 |
| PubMed ID | 10810156 |
| Journal | Protein Eng |
| Year | 2000 |
| Volume | 13 |
| Pages | 253-8 |
| Authors | Nurachman Z, Akanuma S, Sato T, Oshima T, Tanaka N |
| Title | Crystal structures of 3-isopropylmalate dehydrogenases with mutations at the C-terminus: crystallographic analyses of structure-stability relationships. |
| Related PDB | 1dpz 1dr0 1dr8 |
| Related UniProtKB | P61495 |
| [31] | |
| Resource | |
| Comments | X-ray crystallography |
| Medline ID | |
| PubMed ID | 11173468 |
| Journal | Acta Crystallogr D Biol Crystallogr |
| Year | 2001 |
| Volume | 57 |
| Pages | 225-32 |
| Authors | Qu C, Akanuma S, Tanaka N, Moriyama H, Oshima T |
| Title |
Design, |
| Related PDB | 1g2u 1gc8 1gc9 |
| Related UniProtKB | |
| [32] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 11369782 |
| Journal | J Biol Chem |
| Year | 2001 |
| Volume | 276 |
| Pages | 28121-5 |
| Authors | Svingor A, Kardos J, Hajdu I, Nemeth A, Zavodszky P |
| Title |
A better enzyme to cope with cold. |
| Related PDB | |
| Related UniProtKB | |
| [33] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 11297665 |
| Journal | Protein Eng |
| Year | 2001 |
| Volume | 14 |
| Pages | 81-4 |
| Authors | Hirose R, Suzuki T, Moriyama H, Sato T, Yamagishi A, Oshima T, Tanaka N |
| Title | Crystal structures of mutants of Thermus thermophilus IPMDH adapted to low temperatures. |
| Related PDB | |
| Related UniProtKB | |
| [34] | |
| Resource | |
| Comments | |
| Medline ID | |
| PubMed ID | 11297666 |
| Journal | Protein Eng |
| Year | 2001 |
| Volume | 14 |
| Pages | 85-91 |
| Authors | Suzuki T, Yasugi M, Arisaka F, Yamagishi A, Oshima T |
| Title |
Adaptation of a thermophilic enzyme, |
| Related PDB | |
| Related UniProtKB | |
| Comments |
|---|
|
This enzyme catalyzes two reactions; firstly the dehydrogenation of 3-carboxy-2-hydroxy-4-methylpentanoate, |
| Created | Updated |
|---|---|
| 2004-07-22 | 2009-02-26 |