DB code: S00382
CATH domain | 3.40.50.9100 : Rossmann fold | Catalytic domain |
---|---|---|
E.C. | 4.2.1.10 | |
CSA | ||
M-CSA | ||
MACiE | M0055 |
CATH domain | Related DB codes (homologues) |
---|
Uniprot Enzyme Name | UniprotKB | Protein name | Synonyms | RefSeq | Pfam |
---|---|---|---|---|
P15474 |
3-dehydroquinate dehydratase
|
3-dehydroquinase
EC 4.2.1.10 Type II DHQase |
NP_626225.1
(Protein)
NC_003888.3 (DNA/RNA sequence) |
PF01220
(DHquinase_II)
[Graphical View] |
P0A4Z6 |
3-dehydroquinate dehydratase
|
3-dehydroquinase
EC 4.2.1.10 Type II DHQase |
NP_217053.1
(Protein)
NC_000962.3 (DNA/RNA sequence) NP_337108.1 (Protein) NC_002755.2 (DNA/RNA sequence) YP_006515978.1 (Protein) NC_018143.1 (DNA/RNA sequence) |
PF01220
(DHquinase_II)
[Graphical View] |
P54517 |
3-dehydroquinate dehydratase
|
3-dehydroquinase
EC 4.2.1.10 Type II DHQase |
NP_390327.1
(Protein)
NC_000964.3 (DNA/RNA sequence) |
PF01220
(DHquinase_II)
[Graphical View] |
KEGG enzyme name |
---|
3-dehydroquinate dehydratase
3-dehydroquinate hydrolase DHQase dehydroquinate dehydratase 3-dehydroquinase 5-dehydroquinase dehydroquinase 5-dehydroquinate dehydratase 5-dehydroquinate hydro-lyase 3-dehydroquinate hydro-lyase |
UniprotKB: Accession Number | Entry name | Activity | Subunit | Subcellular location | Cofactor |
---|---|---|---|---|---|
P15474 | AROQ_STRCO | 3-dehydroquinate = 3-dehydroshikimate + H(2)O. | Homododecamer. | ||
P0A4Z6 | AROQ_MYCTU | 3-dehydroquinate = 3-dehydroshikimate + H(2)O. | Homododecamer. | ||
P54517 | AROQ_BACSU | 3-dehydroquinate = 3-dehydroshikimate + H(2)O. | Homododecamer. |
KEGG Pathways | Map code | Pathways | E.C. |
---|---|---|
MAP00400 | Phenylalanine, tyrosine and tryptophan biosynthesis |
Compound table | |||||||||
---|---|---|---|---|---|---|---|---|---|
Substrates | Products | Intermediates | |||||||
KEGG-id | C00944 | C02637 | C00001 | ||||||
E.C. | |||||||||
Compound | 3-Dehydroquinate | 3-Dehydroshikimate | H2O | ||||||
Type | carbohydrate,carboxyl group | carbohydrate,carboxyl group | H2O | ||||||
ChEBI |
17947 17947 |
30918 30918 |
15377 15377 |
||||||
PubChem |
439351 439351 |
439774 439774 |
22247451 962 22247451 962 |
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1d0iA |
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Unbound | Unbound | ||
1d0iB |
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Unbound | Unbound | ||
1d0iC |
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Unbound | Unbound | ||
1d0iD |
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Unbound | Unbound | ||
1d0iE |
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Unbound | Unbound | ||
1d0iF |
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Unbound | Unbound | ||
1d0iG |
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Unbound | Unbound | ||
1d0iH |
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Unbound | Unbound | ||
1d0iI |
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Unbound | Unbound | ||
1d0iJ |
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Unbound | Unbound | ||
1d0iK |
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Unbound | Unbound | ||
1d0iL |
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Unbound | Unbound | ||
1gu0A |
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Unbound | Unbound | ||
1gu0B |
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Unbound | Unbound | ||
1gu0C |
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Unbound | Unbound | ||
1gu0D |
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Unbound | Unbound | ||
1gu0E |
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Unbound | Unbound | ||
1gu0F |
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Unbound | Unbound | ||
1gu0G |
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Unbound | Unbound | ||
1gu0H |
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Unbound | Unbound | ||
1gu0I |
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Unbound | Unbound | ||
1gu0J |
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Unbound | Unbound | ||
1gu0K |
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Unbound | Unbound | ||
1gu0L |
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Unbound | Unbound | ||
1gu1A |
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Analogue:FA1 | Unbound | ||
1gu1B |
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Analogue:FA1 | Unbound | ||
1gu1C |
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Analogue:FA1 | Unbound | ||
1gu1D |
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Analogue:FA1 | Unbound | ||
1gu1E |
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Analogue:FA1 | Unbound | ||
1gu1F |
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Analogue:FA1 | Unbound | ||
1gu1G |
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Analogue:FA1 | Unbound | ||
1gu1H |
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Analogue:FA1 | Unbound | ||
1gu1I |
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Analogue:FA1 | Unbound | ||
1gu1J |
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Analogue:FA1 | Unbound | ||
1gu1K |
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Analogue:FA1 | Unbound | ||
1gu1L |
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Analogue:FA1 | Unbound | ||
1gtzA |
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Unbound | Bound:DHK | ||
1gtzB |
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Unbound | Bound:DHK | ||
1gtzC |
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Unbound | Bound:DHK | ||
1gtzD |
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Unbound | Bound:DHK | ||
1gtzE |
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Unbound | Bound:DHK | ||
1gtzF |
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Unbound | Bound:DHK | ||
1gtzG |
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Unbound | Bound:DHK | ||
1gtzH |
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Unbound | Bound:DHK | ||
1gtzI |
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Unbound | Bound:DHK | ||
1gtzJ |
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Unbound | Bound:DHK | ||
1gtzK |
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Unbound | Bound:DHK | ||
1gtzL |
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Unbound | Bound:DHK | ||
1h05A |
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Unbound | Unbound | ||
1h0rA |
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Analogue:FA1 | Unbound | ||
1h0sA |
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Analogue:FA6 | Unbound | ||
2dhqA |
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Unbound | Unbound | ||
1gqoA |
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Unbound | Unbound | ||
1gqoB |
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Unbound | Unbound | ||
1gqoC |
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Unbound | Unbound | ||
1gqoD |
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Unbound | Unbound | ||
1gqoE |
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Unbound | Unbound | ||
1gqoF |
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Unbound | Unbound | ||
1gqoG |
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Unbound | Unbound | ||
1gqoH |
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Unbound | Unbound | ||
1gqoI |
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Unbound | Unbound | ||
1gqoJ |
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Unbound | Unbound | ||
1gqoK |
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Unbound | Unbound | ||
1gqoL |
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Unbound | Unbound | ||
1gqoM |
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Unbound | Unbound | ||
1gqoN |
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Unbound | Unbound | ||
1gqoO |
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Unbound | Unbound | ||
1gqoP |
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Unbound | Unbound | ||
1gqoQ |
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Unbound | Unbound | ||
1gqoR |
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Unbound | Unbound | ||
1gqoS |
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Unbound | Unbound | ||
1gqoT |
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Unbound | Unbound | ||
1gqoU |
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Unbound | Unbound | ||
1gqoV |
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Unbound | Unbound | ||
1gqoX |
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Unbound | Unbound | ||
1gqoY |
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Unbound | Unbound |
Reference for Active-site residues | ||
---|---|---|
resource | references | E.C. |
literature [4] & [12] |
Active-site residues | ||||||||||
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PDB | Catalytic residues | Cofactor-binding residues | Modified residues | Main-chain involved in catalysis | Comment | |||||
1d0iA |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iB |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iC |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iD |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iE |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iF |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iG |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iH |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iI |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iJ |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iK |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1d0iL |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0A |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0B |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0C |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0D |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0E |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0F |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0G |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0H |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0I |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0J |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0K |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu0L |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1A |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1B |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1C |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1D |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1E |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1F |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1G |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1H |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1I |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1J |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1K |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gu1L |
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ASN 16;ARG 23;TYR 28;HIS 106 | ||||
1gtzA |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzB |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzC |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzD |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzE |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzF |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzG |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzH |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzI |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzJ |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzK |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1gtzL |
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ASN 16; ;TYR 28;HIS 106 | mutant R23A | |||
1h05A |
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ASN 12;ARG 19; ;HIS 101 | invisible 24Y | |||
1h0rA |
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ASN 12; ;TYR 24;HIS 101 | invisible 19R | |||
1h0sA |
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ASN 12;ARG 19; ;HIS 101 | invisible 24Y | |||
2dhqA |
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ASN 12;ARG 19; ;HIS 101 | invisible 24Y | |||
1gqoA |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoB |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoC |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoD |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoE |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoF |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoG |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoH |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoI |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoJ |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoK |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoL |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoM |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoN |
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ASN 10; ; ;HIS 99 | invisible 16-24 | |||
1gqoO |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoP |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoQ |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoR |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoS |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoT |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoU |
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ASN 10;ARG 17; ;HIS 99 | ||||
1gqoV |
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ASN 10;ARG 17; ;HIS 99 | invisible 18-23 | |||
1gqoX |
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ASN 10; ; ;HIS 99 | invisible 17-23 | |||
1gqoY |
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ASN 10;ARG 17; ;HIS 99 |
References for Catalytic Mechanism | ||
---|---|---|
References | Sections | No. of steps in catalysis |
[8]
|
Fig. 1, p.522 | 3 |
[12]
|
Fig.8, p.497-498 | 2 |
References | |
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[1] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 1554351 |
Journal | Biochem J |
Year | 1992 |
Volume | 282 |
Pages | 687-95 |
Authors | Kleanthous C, Deka R, Davis K, Kelly SM, Cooper A, Harding SE, Price NC, Hawkins AR, Coggins JR |
Title | A comparison of the enzymological and biophysical properties of two distinct classes of dehydroquinase enzymes. |
Related PDB | |
Related UniProtKB | |
[2] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 8064862 |
Journal | J Mol Biol |
Year | 1994 |
Volume | 241 |
Pages | 488-91 |
Authors | Gourley DG, Coggins JR, Isaacs NW, Moore JD, Charles IG, Hawkins AR |
Title | Crystallization of a type II dehydroquinase from Mycobacterium tuberculosis. |
Related PDB | |
Related UniProtKB | |
[3] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 8870678 |
Journal | Biochem J |
Year | 1996 |
Volume | 319 |
Pages | 269-78 |
Authors | Bottomley JR, Hawkins AR, Kleanthous C |
Title | Conformational changes and the role of metals in the mechanism of type II dehydroquinase from Aspergillus nidulans. |
Related PDB | |
Related UniProtKB | |
[4] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 8798709 |
Journal | J Biol Chem |
Year | 1996 |
Volume | 271 |
Pages | 24492-7 |
Authors | Krell T, Horsburgh MJ, Cooper A, Kelly SM, Coggins JR |
Title |
Localization of the active site of type II dehydroquinases. |
Related PDB | |
Related UniProtKB | |
[5] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9147947 |
Journal | Biochem Soc Trans |
Year | 1997 |
Volume | 25 |
Pages | 348; replaces 93S |
Authors | Boam DJ, Price NC, Kelly SM, Krell T, Coggins JR |
Title | Evidence that the active site in type II dehydroquinase from Streptomyces coelicolor is near the single tryptophan. |
Related PDB | |
Related UniProtKB | |
[6] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9473305 |
Journal | Arch Biochem Biophys |
Year | 1998 |
Volume | 350 |
Pages | 298-306 |
Authors | Florova G, Denoya CD, Morgenstern MR, Skinner DD, Reynolds KA |
Title |
Cloning, |
Related PDB | |
Related UniProtKB | |
[7] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9931316 |
Journal | Biochem J |
Year | 1999 |
Volume | 338 |
Pages | 195-202 |
Authors | Price NC, Boam DJ, Kelly SM, Duncan D, Krell T, Gourley DG, Coggins JR, Virden R, Hawkins AR |
Title | The folding and assembly of the dodecameric type II dehydroquinases. |
Related PDB | |
Related UniProtKB | |
[8] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10360352 |
Journal | Nat Struct Biol |
Year | 1999 |
Volume | 6 |
Pages | 521-5 |
Authors | Gourley DG, Shrive AK, Polikarpov I, Krell T, Coggins JR, Hawkins AR, Isaacs NW, Sawyer L |
Title | The two types of 3-dehydroquinase have distinct structures but catalyze the same overall reaction. |
Related PDB | 2dhq |
Related UniProtKB | |
[9] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10698442 |
Journal | Bioorg Med Chem Lett |
Year | 2000 |
Volume | 10 |
Pages | 231-4 |
Authors | Parker EJ, Gonzalez Bello C, Coggins JR, Hawkins AR, Abell C |
Title | Mechanistic studies on type I and type II dehydroquinase with (6R)- and (6S)-6-fluoro-3-dehydroquinic acids. |
Related PDB | |
Related UniProtKB | |
[10] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11173479 |
Journal | Acta Crystallogr D Biol Crystallogr |
Year | 2001 |
Volume | 57 |
Pages | 279-80 |
Authors | Kwak JE, Lee JY, Han BW, Moon J J, Sohn SH, Suh SW |
Title | Crystallization and preliminary X-ray crystallographic analysis of type II dehydroquinase from Helicobacter pylori. |
Related PDB | |
Related UniProtKB | |
[11] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12387860 |
Journal | FEBS Lett |
Year | 2002 |
Volume | 530 |
Pages | 24-30 |
Authors | Evans LD, Roszak AW, Noble LJ, Robinson DA, Chalk PA, Matthews JL, Coggins JR, Price NC, Lapthorn AJ |
Title | Specificity of substrate recognition by type II dehydroquinases as revealed by binding of polyanions. |
Related PDB | 1h05 |
Related UniProtKB | |
[12] | |
Resource | |
Comments | X-ray crystallography |
Medline ID | |
PubMed ID | 11937054 |
Journal | Structure (Camb) |
Year | 2002 |
Volume | 10 |
Pages | 493-503 |
Authors | Roszak AW, Robinson DA, Krell T, Hunter IS, Fredrickson M, Abell C, Coggins JR, Lapthorn AJ |
Title | The structure and mechanism of the type II dehydroquinase from Streptomyces coelicolor. |
Related PDB | 1d0i 1gu0 1gu1 1gtz |
Related UniProtKB | |
[13] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12784220 |
Journal | Proteins |
Year | 2003 |
Volume | 51 |
Pages | 616-7 |
Authors | Lee BI, Kwak JE, Suh SW |
Title | Crystal structure of the type II 3-dehydroquinase from Helicobacter pylori. |
Related PDB | |
Related UniProtKB |
Comments |
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Created | Updated |
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2004-04-10 | 2009-02-26 |