DB code: S00187
CATH domain | 3.10.270.10 : Urate Oxidase | Catalytic domain |
---|---|---|
E.C. | 1.7.3.3 | |
CSA | 1uox | |
M-CSA | 1uox | |
MACiE | M0118 |
CATH domain | Related DB codes (homologues) |
---|---|
3.10.270.10 : Urate Oxidase | D00541 |
Uniprot Enzyme Name | UniprotKB | Protein name | Synonyms | RefSeq | Pfam |
---|---|---|---|---|
B8HFX6 |
|
Urate oxidase
EC 1.7.3.3 |
YP_002489258.1
(Protein)
NC_011886.1 (DNA/RNA sequence) |
PF01014
(Uricase)
[Graphical View] |
Q00511 |
Uricase
|
EC
1.7.3.3
Urate oxidase |
PF01014
(Uricase)
[Graphical View] |
KEGG enzyme name |
---|
urate oxidase
uric acid oxidase uricase uricase II |
UniprotKB: Accession Number | Entry name | Activity | Subunit | Subcellular location | Cofactor |
---|---|---|---|---|---|
B8HFX6 | B8HFX6_9MICC | ||||
Q00511 | URIC_ASPFL | Urate + O(2) + H(2)O = 5-hydroxyisourate + H(2)O(2). | Homotetramer. | Peroxisome. |
KEGG Pathways | Map code | Pathways | E.C. |
---|---|---|
MAP00230 | Purine metabolism | |
MAP00232 | Caffeine metabolism |
Compound table | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Substrates | Products | Intermediates | |||||||||
KEGG-id | C00366 | C00007 | C00001 | C11821 | C00027 | ||||||
E.C. | |||||||||||
Compound | Urate | O2 | H2O | 5-Hydroxyisourate | H2O2 | ||||||
Type | amide group,aromatic ring (with nitrogen atoms) | others | H2O | amide group,aromatic ring (with nitrogen atoms),imine group | others | ||||||
ChEBI |
17775 46811 46814 46817 46823 62589 17775 46811 46814 46817 46823 62589 |
15379 26689 27140 15379 26689 27140 |
15377 15377 |
18072 18072 |
16240 16240 |
||||||
PubChem |
1175 1175 |
977 977 |
22247451 962 22247451 962 |
250388 250388 |
22326046 784 22326046 784 |
||||||
1vaxA | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxB | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxC | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxD | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxE | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxF | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxG | Unbound | Unbound | Unbound | Unbound | |||||||
1vaxH | Unbound | Unbound | Unbound | Unbound | |||||||
1vayA | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayB | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayC | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayD | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayE | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayF | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayG | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1vayH | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1r4sA | Analogue:MUA | Unbound | Unbound | Unbound | |||||||
1r4uA | Analogue:OXC | Unbound | Unbound | Unbound | |||||||
1r51A | Analogue:AZA | Unbound | Unbound | Unbound | |||||||
1r56A | Unbound | Unbound | Unbound | Unbound | |||||||
1r56B | Unbound | Unbound | Unbound | Unbound | |||||||
1r56C | Unbound | Unbound | Unbound | Unbound | |||||||
1r56D | Unbound | Unbound | Unbound | Unbound | |||||||
1r56E | Unbound | Unbound | Unbound | Unbound | |||||||
1r56F | Unbound | Unbound | Unbound | Unbound | |||||||
1r56G | Unbound | Unbound | Unbound | Unbound | |||||||
1r56H | Unbound | Unbound | Unbound | Unbound | |||||||
1uoxA | Unbound | Unbound | Unbound | Unbound | |||||||
1wrrA | Analogue:UNC | Unbound | Unbound | Unbound | |||||||
1ws2A | Analogue:URN | Unbound | Unbound | Unbound | |||||||
1ws2B | Analogue:URN | Unbound | Unbound | Unbound | |||||||
1ws2C | Analogue:URN | Unbound | Unbound | Unbound | |||||||
1ws2D | Analogue:URN | Unbound | Unbound | Unbound | |||||||
1ws3A | Analogue:URA | Unbound | Unbound | Unbound | |||||||
1ws3B | Analogue:URA | Unbound | Unbound | Unbound | |||||||
1ws3C | Analogue:URA | Unbound | Unbound | Unbound | |||||||
1ws3D | Analogue:URA | Unbound | Unbound | Unbound | |||||||
1xt4A | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xxjA | Analogue:UNC | Unbound | Unbound | Unbound | |||||||
1xxjB | Analogue:UNC | Unbound | Unbound | Unbound | |||||||
1xxjC | Analogue:UNC | Unbound | Unbound | Unbound | |||||||
1xxjD | Analogue:UNC | Unbound | Unbound | Unbound | |||||||
1xy3A | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3B | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3C | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3D | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3E | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3F | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3G | Analogue:GUN | Unbound | Unbound | Unbound | |||||||
1xy3H | Analogue:GUN | Unbound | Unbound | Unbound |
Reference for Active-site residues | ||
---|---|---|
resource | references | E.C. |
Swiss-prot;Q00511 & literature [11], [18], [19] |
Active-site residues | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
PDB | Catalytic residues | Cofactor-binding residues | Modified residues | Main-chain involved in catalysis | Comment | |||||
1vaxA | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxB | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxC | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxD | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxE | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxF | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxG | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vaxH | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayA | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayB | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayC | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayD | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayE | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayF | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayG | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1vayH | LYS 22;THR 67;ARG 180;GLN 223;ASN 249 | THR 67 | ||||||||
1r4sA | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r4uA | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r51A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56B | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56C | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56D | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56E | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56F | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56G | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1r56H | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1uoxA | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1wrrA | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws2A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws2B | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws2C | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws2D | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws3A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws3B | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws3C | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1ws3D | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xt4A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xxjA | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xxjB | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xxjC | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xxjD | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3A | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3B | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3C | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3D | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3E | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3F | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3G | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 | ||||||||
1xy3H | LYS 10;THR 57;ARG 176;GLN 228;ASN 254 | THR 57 |
References for Catalytic Mechanism | ||
---|---|---|
References | Sections | No. of steps in catalysis |
[8]
|
Fig.4, p.950-951 | |
[9]
|
Scheme 1 | |
[18]
|
Scheme 1, Fig.5, p.4097-4100 | |
[19]
|
p.460-462 |
References | |
---|---|
[1] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 5640165 |
Journal | Biochim Biophys Acta |
Year | 1968 |
Volume | 151 |
Pages | 63-9 |
Authors | Nose K, Arima K |
Title |
Studies on bacterial urate:oxygen oxidoreductase. |
Related PDB | |
Related UniProtKB | |
[2] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 4696756 |
Journal | Biochemistry |
Year | 1973 |
Volume | 12 |
Pages | 1358-63 |
Authors | Pitts OM, Priest DG |
Title |
Uricase reaction intermediate. |
Related PDB | |
Related UniProtKB | |
[3] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 4834240 |
Journal | Nature |
Year | 1974 |
Volume | 249 |
Pages | 490-1 |
Authors | Naparstek A, Romette JL, Kernevez JP, Thomas D |
Title | Memory in enzyme membranes. |
Related PDB | |
Related UniProtKB | |
[4] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 455938 |
Journal | Comput Biol Med |
Year | 1979 |
Volume | 9 |
Pages | 145-53 |
Authors | Lam CF, Cross AP |
Title | Comparative study of parameter estimation procedures in enzymic kinetics. |
Related PDB | |
Related UniProtKB | |
[5] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 7194181 |
Journal | Enzyme |
Year | 1981 |
Volume | 26 |
Pages | 49-53 |
Authors | Nishimura H, Matsushima A, Inada Y |
Title |
Improved modification of yeast uricase with polyethylene glycol, |
Related PDB | |
Related UniProtKB | |
[6] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9222322 |
Journal | FEBS Lett |
Year | 1981 |
Volume | 134 |
Pages | 50-2 |
Authors | Yoshida K, Nishimura H, Takahashi K, Matsushima A, Inada Y |
Title | Modification of amino groups in Candida utilis uricase with naphthoquinone disulfonic acid in relation to the enzymic activity. |
Related PDB | |
Related UniProtKB | |
[7] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9125493 |
Journal | Biochemistry |
Year | 1997 |
Volume | 36 |
Pages | 4731-8 |
Authors | Kahn K, Tipton PA |
Title | Kinetic mechanism and cofactor content of soybean root nodule urate oxidase. |
Related PDB | |
Related UniProtKB | |
[8] | |
Resource | |
Comments | X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS) |
Medline ID | 98025064 |
PubMed ID | 9360612 |
Journal | Nat Struct Biol |
Year | 1997 |
Volume | 4 |
Pages | 947-52 |
Authors | Colloc'h N, el Hajji M, Bachet B, L'Hermite G, Schiltz M, Prange T, Castro B, Mornon JP |
Title | Crystal structure of the protein drug urate oxidase-inhibitor complex at 2.05 A resolution. |
Related PDB | 1uox |
Related UniProtKB | Q00511 |
[9] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 9709003 |
Journal | Biochemistry |
Year | 1998 |
Volume | 37 |
Pages | 11651-9 |
Authors | Kahn K, Tipton PA |
Title | Spectroscopic characterization of intermediates in the urate oxidase reaction. |
Related PDB | |
Related UniProtKB | |
[10] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10361492 |
Journal | Anal Chem |
Year | 1999 |
Volume | 71 |
Pages | 1928-34 |
Authors | Nakaminami T, Ito S, Kuwabata S, Yoneyama H |
Title | Uricase-catalyzed oxidation of uric acid using an artificial electron acceptor and fabrication of amperometric uric acid sensors with use of a redox ladder polymer. |
Related PDB | |
Related UniProtKB | |
[11] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10227848 |
Journal | J Membr Biol |
Year | 1999 |
Volume | 169 |
Pages | 13-27 |
Authors | Leal-Pinto E, Cohen BE, Abramson RG |
Title | Functional analysis and molecular modeling of a cloned urate transporter/channel. |
Related PDB | |
Related UniProtKB | |
[12] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 10737935 |
Journal | Proteins |
Year | 2000 |
Volume | 39 |
Pages | 142-54 |
Authors | Colloc'h N, Poupon A, Mornon JP |
Title |
Sequence and structural features of the T-fold, |
Related PDB | |
Related UniProtKB | |
[13] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 11856833 |
Journal | Acta Crystallogr D Biol Crystallogr |
Year | 2002 |
Volume | 58 |
Pages | 472-9 |
Authors | Vivares D, Bonnete F |
Title | X-ray scattering studies of Aspergillus flavus urate oxidase: towards a better understanding of PEG effects on the crystallization of large proteins. |
Related PDB | |
Related UniProtKB | |
[14] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12060597 |
Journal | Am J Physiol Renal Physiol |
Year | 2002 |
Volume | 283 |
Pages | F150-63 |
Authors | Leal-Pinto E, Cohen BE, Lipkowitz MS, Abramson RG |
Title |
Functional analysis and molecular model of the human urate transporter/channel, |
Related PDB | |
Related UniProtKB | |
[15] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12149119 |
Journal | Biotechnol Appl Biochem |
Year | 2002 |
Volume | 36 |
Pages | 21-31 |
Authors | Bayol A, Capdevielle J, Malazzi P, Buzy A, Claude Bonnet M, Colloc'h N, Mornon JP, Loyaux D, Ferrara P |
Title |
Modification of a reactive cysteine explains differences between rasburicase and Uricozyme, |
Related PDB | |
Related UniProtKB | |
[16] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12208494 |
Journal | FEBS Lett |
Year | 2002 |
Volume | 526 |
Pages | 5-10 |
Authors | Colloc'h N, Mornon JP, Camadro JM |
Title | Towards a new T-fold protein?: the coproporphyrinogen III oxidase sequence matches many structural features from urate oxidase. |
Related PDB | |
Related UniProtKB | |
[17] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12499547 |
Journal | Acta Crystallogr D Biol Crystallogr |
Year | 2003 |
Volume | 59 |
Pages | 118-26 |
Authors | Girard E, Stelter M, Anelli PL, Vicat J, Kahn R |
Title | A new class of gadolinium complexes employed to obtain high-phasing-power heavy-atom derivatives: results from SAD experiments with hen egg-white lysozyme and urate oxidase from Aspergillus flavus. |
Related PDB | |
Related UniProtKB | |
[18] | |
Resource | |
Comments | |
Medline ID | |
PubMed ID | 12680763 |
Journal | Biochemistry |
Year | 2003 |
Volume | 42 |
Pages | 4094-100 |
Authors | Imhoff RD, Power NP, Borrok MJ, Tipton PA |
Title | General base catalysis in the urate oxidase reaction: evidence for a novel Thr-Lys catalytic diad. |
Related PDB | |
Related UniProtKB | |
[19] | |
Resource | |
Comments | X-ray crystallography |
Medline ID | |
PubMed ID | 14993669 |
Journal | Acta Crystallogr D Biol Crystallogr |
Year | 2004 |
Volume | 60 |
Pages | 453-62 |
Authors | Retailleau P, Colloc'h N, Vivares D, Bonnete F, Castro B, El-Hajji M, Mornon JP, Monard G, Prange T |
Title | Complexed and ligand-free high-resolution structures of urate oxidase (Uox) from Aspergillus flavus: a reassignment of the active-site binding mode. |
Related PDB | 1r4s 1r4u 1r51 1r56 |
Related UniProtKB | |
[20] | |
Resource | |
Comments | X-ray crystallography |
Medline ID | |
PubMed ID | 15735331 |
Journal | Acta Crystallogr D Biol Crystallogr |
Year | 2005 |
Volume | 61 |
Pages | 218-29 |
Authors | Retailleau P, Colloc'h N, Vivares D, Bonnete F, Castro B, El Hajji M, Prange T |
Title | Urate oxidase from Aspergillus flavus: new crystal-packing contacts in relation to the content of the active site. |
Related PDB | 1wrr 1ws2 1ws3 1xt4 1xxj 1xy3 |
Related UniProtKB |
Comments |
---|
This enzyme is enzyme is homologous to the counterpart enzyme from Bacillus sp. According to the literature [9], (A) Oxygenation by O2 (B) Deoxygenation to release H2O2 (C) Additive double-bond deformation by H2O (or hydration) |
Created | Updated |
---|---|
2004-07-15 | 2009-04-08 |