RLCP 8.131.-.- :EzCatDB EzCatDB

R L C P
Hierarchic Classification of Catalytic Mechanisms


R 8.-.-.- : Isomerization (shift of double-bond position) (Reaction)

L 8.131.-.- : Adjacent bond; O=C-C to O-C=C (Ligand group involved)


Catalytic mechanisms

  • 8.131.42001.- : Base-Acid/Stabilizers; Base deprotonation of initially single-bonded atom leading to intermediate formation; Intermediate stabilized; Acid protonation to initially double-bonded atom
  • 8.131.160500.- : Base/Modulator/Stabilizer; Modulator-assisted base deprotonation of initially-single-bonded atom; Initially-double-bonded atom stabilized
  • 8.131.161950.- : Dodecenoyl-CoA delta-isomerase 1st reaction step-like mechanism (Base/Stabilizer); Base deprotonation of initially-single-bonded atom; Initially-double-bonded atom stabilized
  • 8.131.164850.- : GDP mannose dehydratase 2nd reaction step-like mechanism (Base/Modulator); Modulator-assisted base deprotonation of initially-single-bonded atom
  • 8.131.581400.- : Base/Acid-Stabilizer/Stabilizer; Inorganic cofactor-assisted stabilization of adjacent atoms of central atom/initially single-bonded atom/double-bonded atom; Base deprotonation of initially single-bonded atom & Acid protonation to initially double-bonded atom
  • 8.131.584400.- : Base/Base-Acid/Modulator; Modulator-assisted base deprotonation of initially single-bonded atom; Inorganic cofactor-assisted proton transfer by base-acid from atom adjacent to initially single-bonded atom to initially double-bonded atom
  • 8.131.704320.- : 6-phospho-alpha-glucosidase 2nd reaction step-like mechanism (Base/Modulator); Modulator-assisted base through water & Inorganic cofactor stabilization of initially double-bonded atom and adjacent atom to initially single-bonded atom; Base deprotonation of initially single-bonded atom
  • 8.131.705800.- : Base; Inorganic-cofactor-assisted stabilization of double-bonded atom and adjacent atom to single-bonded atom; Inorganic-cofactor-assisted activation of initially single-bonded atom; Base deprotonation of single-bonded atom
  • 8.131.708000.- : Base/Stabilizer; Inorganic-cofactor-bound to double-bonded atom; Base deprotonation of initially single-bonded atom leading to isomerization; Stabilization of charge on finally single-bonded atom
  • 8.131.712490.- : Glucarate dehydratase 1st reaction step-like mechanism (Base); Base deprotonation from single-bonded atom; Inorganic-cofactor stabilization of double-bonded atom
  • 8.131.1241100.- : GDP fucose synthase 1st reaction step-like mechanism (Base/Stabilizer/Modulator); Modulation of Stabilizer through inorganic-cofactor; Base deprotonation of initially single-bonded atom; Stabilization of initially double-bonded atom
  • Copyright: Nozomi Nagano, JST & CBRC-AIST
    Funded by PRESTO/Japan Science and Technology Agency (JST) (December 2001 - November 2004)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2006)
    Funded by Grant-in-Aid for Scientific Research (B)/Japan Society for the Promotion of Science (JSPS) (April 2005 - March 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (September 2005 - September 2008)
    Funded by BIRD/Japan Science and Technology Agency (JST) (October 2007 - September 2010)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2011 - March 2012)
    Funded by Grant-in-Aid for Publication of Scientific Research Results/Japan Society for the Promotion of Science (JSPS) (April 2012 - March 2013)
    Supported by the commission for the Development of Artificial Gene Synthesis Technology for Creating Innovative Biomaterial from the Ministry of Economy, Trade and Industry (METI) (October 2012 - March 2016)
    Funded by the project commissioned by the New Energy and Industrial Technology Development Organization (NEDO) (April 2016 -)